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Yeast QQQ BUILD 2010

If you wish to retrieve SRM assays from the library generated from this build, please click on Search SRM Assays, and select "YeastSRMAtlas_2012-08" build, and choose "QTrap 4000" instrument to only see data from that instrument.

Peptide sequences in FASTA format:
PSM FDR = 0.001

Biosequence Set in FASTA format:
PSM FDR = 0.001

Peptide CDS coordinates:
PSM FDR = 0.001

Database tables exported as an XML file:
PSM FDR = 0.001

Database tables exported as mysql dump file:
PSM FDR = 0.001

Peptide CDS and chromosomal coordinates:
PSM FDR = 0.001

Qtrap Spectral library: recommended to extract SRM coordinates.
201207_QQQ_lib.tgz (SpectraST splib and sptxt format)

Raw data and processed results:
Repository

Yeast Orbitrap BUILD 2010

Peptide sequences in FASTA format:
PSM FDR = 0.0007

Biosequence Set in FASTA format:
PSM FDR = 0.0007

Peptide CDS coordinates:
PSM FDR = 0.0007

Database tables exported as an XML file:
PSM FDR = 0.0007

Database tables exported as mysql dump file:
PSM FDR = 0.0007

Peptide CDS and chromosomal coordinates:
PSM FDR = 0.0007

"Orbitrap/Ion Trap" Spectral library: recommended for spectral matching of yeast shotgun ion trap data.
201009_Orbi_lib.tgz (SpectraST splib and sptxt format)

Raw data and processed results:
Repository

Yeast UIS background file

Shows calculation of Unique Ion Signatures (UIS) for all yeast proteins as defined by SGD. The UIS number for a given peptide is a measure of how many fragment ions, from most to least intense, must be measured to have an unambiguous assay for that molecule.

UIS calculations for SGD proteins, assuming 1Da precursor and 1Da fragment ion mass accuracy. Does not include retention time consideration.

allbackground_nossrcalc_1Da1Da.csv

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